5 Best Ecommerce Accounting Software 2022

Cody Cromwell
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Top 5 Ecommerce Accounting Software for Small Businesses

Online businesses can be just as challenging as brick and the mortar establishments but the ecommerce sector is experiencing unparalleled growth. Homegrown and small businesses with less resources tend to enjoy a competitive advantage. The landscape is changing rapidly; this is why it’s important to possess a tool that can keep your business efficient.

Small businesses are usually cash based because of the liability that comes with accepting credit cards. Not all companies can accept credit cards and many do not carry the burden of adding it as a service. This means that you have to check your cash often and know when you’re running low before the end of the month. A good accountancy would help you be more relaxed while overseeing your cash and knowing when the balance is low before you’re short.

One of the top accounting software just for small businesses is known for its ease of use and low cost. Some of the additional benefits that you’ll receive when you utilize this accounting software would be more time for analyzing and more efficiency in your business. The software also has an easy to use interface that is simple for even beginners to understand.

Accounting Software Integrations

If you’re looking for a simple and efficient way to manage your business, choosing a software for your ecommerce business can make a huge difference. There are a variety of accounting software out there, some of them may fit your needs. Below are five ecommerce accounting software in 2022. You can choose one that fits you.


With the Paypal integration you can manage your accounts and everything under the sun. This is all in a nice and easy package. It also has a nice way of reporting and a nice interface.


Freshbooks offers you a nice way to manage your bookkeeping and accounting. It offers online bill paying features. It is easy to use and there’s a lot of information available as well.


The software is capable of allowing multiple businesses to be tied together. The software is easy to work and easy to keep organized. You will be able to grow your business and keep it safe. In terms of pricing it’s one of the more affordable options out there.


Xero has very nice reporting capabilities. You can get the data you are looking for in a quick manner with its ability to break down your financial information. This will make it easier to make cases and grow your business.

QuickBooks Online: Best (Overall) Ecommerce Accounting Software

When it comes to accounting software, it’s hard to go past QuickBooks Online for ecommerce. With an online version of QuickBooks, you can manage incoming, outgoing, and product transactions, as well as accounting and payroll all from your browser. QuickBooks Online also allows you to integrate your online store with QuickBooks desktop software, which is handy, as you can enter product data directly into the desktop software. Plus, QuickBooks Online’s reporting features give you an at-a-glance overview of your daily and monthly sales. And because it’s cloud based, there’s also a strong security and back-up system that ensures your information is secure.

One of the biggest drawbacks of QuickBooks Online is that you’re limited to just your online store. However, if you’re just starting out, connecting your QuickBooks Online account to your WordPress ecommerce site is usually enough to get you off the ground.

FreshBooks: Best Ecommerce Accounting Software for Freelancers

One of the best Ecommerce Accounting Software available today is Freshbooks. It is the right fit for freelancers and small business owners who want to get paid easily and quickly.

FreshBooks is a new solution for all those who are looking to streamline their small business accounting. It is very easy to use and is ideal for businesses working across the globe. It does not matter if your customers are in Miami, Dubai or Palo Alto, FreshBooks works seamlessly with all time zones.

One of the hallmarks of FreshBooks is the ease with which you can keep track of your finances. Apart from the basic invoicing option, it also offers an expense tracking feature. And if you are the one preparing your own invoices, FreshBooks offers an Excel plugin. To further streamline your finances, you can automate your payments with an option of recurring invoices.

FreshBooks also saves you a lot of time. It is a browser-based application and if you already have Adobe Acrobat installed, you can use the app without requiring the installation of any further software.

The core features of FreshBooks are free but there are other features such as invoice templates, paying from multiple banks, bill splitting, paid invoices and more that come at an additional cost.

Xero: Best QuickBooks Online Alternative for Ecommerce Businesses

Xero offers a complete online accounting solution for small and medium sized business owners. Popular for its ease of use, mobile app and cloud-based features, Xero offers an accounting software where you can track your revenue and expenses. Compared to your regular laptop accounting software, Xero is faster and better suited to accommodate the fast-paced and mobile world. Below are 5 reasons why Xero is the best choice for your accounting software.

Quickbooks Online Integration: Integrating Xero with QuickBooks Online enables you to link your Xero accounts and transaction with your Quickbooks Online account and transactions.

B2B: Another advantage of Xero is that you can opt for B2B accounts and you can track transaction details of your customers. While most accounting software is designed to be retail level, Xero is great for B2B as well.

Synchronize your records: Missing transaction or records on your end? No worries, you can connect Xero with almost any cloud-based system and then synchronize your files. This way, you won’t have to keep your records in two different accounts.

Audit Logs: With Xero, you can audit and generate your financial statements with ease. By adding your sales and expenses with a click of a button, you can know the financial standing you have with your customers. You can simply track the income and the expense side of the business as well.

Wave: Best Free Ecommerce Accounting Software

If you’re looking for a free ecommerce accounting software, you’re in luck. Last year we looked at two of the most popular no-cost ecommerce accounting software options. Now we’ll look at some of the more premium options that also offer a free trial.

Wave: Free Accounting Software for Ecommerce

Wave is a free accounting software for ecommerce that allows users to create inventory, manage shipping options, create and view reporting, and manage invoices. It’s probably not going to do everything you need it to, but it’s a solid option to start with. Full details here.

WAXO: Best Free Ecommerce Accounting Software for Limited Needs

WAXO is a free ecommerce accounting software that’s great for users on a limited budget or with a small online business. It’s a great choice for people who need to track fast moving inventory or don’t use professional shipping options (e.g., UPS, FedEx). Full details here.

Wave vs. WAXO: White Paper

Wave vs. WAXO: Screencast

Wave vs. WAXO: Data Sheet

GoDaddy Bookkeeping: Best Ecommerce Accounting Software With Direct Integrations

Ecommerce accounting software offers businesses of every size the tools they need to improve their financial statements, whether they’re tracking their budgets and maintaining accurate records, or keeping tabs on inventory levels and selling the most products. Keeping up with your finances can be time-consuming, especially since small business owners are busy running their entire enterprise, but accounts software can streamline the process and save management teams valuable time.

Accounts software can be especially helpful for entrepreneurs who sell products online because it helps to automate a number of the business’s tasks. When you adopt an ecommerce accounting solution, your business can concentrate on its key responsibilities by having your software handle critical data-entry tasks. To help you decide which ecommerce accounting solution is right for you, we’ve put together a list of software options that are currently on the market. These products offer users a variety of pricing plans and features, so you can select an option that meets your exact requirements.

How to Choose the Best Ecommerce Accounting Software Solution for You

Choose a comprehensive, yet easy to use solution that helps you to keep up with your financials.

Some ecommerce accounting softwares come with preloaded business templates and save time during setup.

Choose a solution that offers vehicle and other purchases capabilities.

Choose a solution that offers custom reporting.

Choose a solution that offers online integrations.

How We Evaluated Accounting Software for Ecommerce Businesses

We’ve been evaluating accounting software products for ecommerce businesses for many years, and we can’t help but think of accounting software as one of the most complex tasks that your business will ever experience ….

That’s because accounting software products must satisfy vastly different users, needs, and operations (including a varying selection of accounting software products).

We narrowed our list of accounting software products to the top five accounting software products for ecommerce businesses based on our experience evaluating accounting software products.

Bottom Line

The bottom line here is that there’s no single right answer. The variety of software is an indication that your approach to the issue is dependent on your unique business and marketing.

The most critical factor is to find an accounting software that is easy to integrate into your current marketing strategy. While many of these applications offer discounts for long-term subscriptions, don’t limit yourself to those systems.

Take the time to research and compare the benefit and features offered by each program.

Make a list of the pros and cons of each platform.

Choose the best program for your business.